Project name: FrankA5C7

Status: done

submitted: 2017-09-13 19:27:23, status changed: 2017-09-15 02:24:52

Project settings
Protein sequence(s) DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP input pdb
Peptide sequence WQDVSDRQGTFWEIY
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCEEEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 17.8419 7.51041 16.9793 134
cluster_2.pdb ( medoid) 17.7861 7.98375 36.66 142
cluster_3.pdb ( medoid) 15.6306 6.39773 24.0185 100
cluster_4.pdb ( medoid) 15.2233 6.43749 37.3982 98
cluster_5.pdb ( medoid) 10.7057 12.3299 38.2046 132
cluster_6.pdb ( medoid) 10.3067 6.40362 40.3292 66
cluster_7.pdb ( medoid) 8.93432 15.3341 63.8548 137
cluster_8.pdb ( medoid) 3.50826 10.2615 31.0731 36
cluster_9.pdb ( medoid) 2.69078 17.4671 38.1414 47
cluster_10.pdb ( medoid) 1.62396 11.6998 29.4966 19

 
Laboratory of Theory of Biopolymers 2015