Project name: 1EG3 unbound default 3 run A NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-25 18:47:29, status changed: 2015-03-13 10:50:05

Project settings
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 46.4369 2.26113 18.3971 105
cluster_2.pdb ( medoid) 29.32 6.82128 24.1125 200
cluster_3.pdb ( medoid) 22.0311 4.94755 20.4949 109
cluster_4.pdb ( medoid) 12.8616 7.85283 18.7335 101
cluster_5.pdb ( medoid) 10.5113 8.08656 25.1838 85
cluster_6.pdb ( medoid) 9.98418 8.81394 23.4972 88
cluster_7.pdb ( medoid) 8.47226 13.8098 27.0537 117
cluster_8.pdb ( medoid) 7.39547 9.46526 20.7831 70
cluster_9.pdb ( medoid) 6.49028 12.4802 31.3645 81
cluster_10.pdb ( medoid) 3.59118 12.2522 22.5639 44
Laboratory of Theory of Biopolymers 2015