Project name: 1ce1 bound default HL GTSSPSAD ss: CCCCCCCC

Status: done

submitted: 2015-02-19 18:28:10, status changed: 2015-03-13 10:50:14

Project settings
Protein sequence(s) QVQLQESGPGLVRPSQTLSLTCTVSGFTFTDFYMNWVRQPPGRGLEWIGFIRDKAKGYTTEYNPSVKGRVTMLVDTSKNQFSLRLSSVTAADTAVYYCAREGHTAAPFDYWGQGSLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEDIQMTQSPSSLSASVGDRVTITCKASQNIDKYLNWYQQKPGKAPKLLIYNTNNLQTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQHISRPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR input pdb
Peptide sequence GTSSPSAD
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.8962 4.17526 33.2065 129
cluster_2.pdb ( medoid) 29.4767 3.90138 18.0769 115
cluster_3.pdb ( medoid) 28.0271 3.67501 8.51709 103
cluster_4.pdb ( medoid) 19.6796 3.91268 9.51779 77
cluster_5.pdb ( medoid) 14.8389 8.15422 44.0289 121
cluster_6.pdb ( medoid) 14.7607 8.87492 39.876 131
cluster_7.pdb ( medoid) 11.3638 7.74389 34.3676 88
cluster_8.pdb ( medoid) 9.9163 9.47934 33.3254 94
cluster_9.pdb ( medoid) 5.12185 15.2289 51.608 78
cluster_10.pdb ( medoid) 3.57188 17.9177 46.0942 64
Laboratory of Theory of Biopolymers 2015