Project name: 2O9S unbound default 3 run A VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-25 18:47:40, status changed: 2015-03-13 10:50:16

Project settings
Protein sequence(s) GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPL input pdb
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.6696 7.19414 24.597 271
cluster_2.pdb ( medoid) 36.7638 3.59049 16.395 132
cluster_3.pdb ( medoid) 31.7725 3.93422 12.2959 125
cluster_4.pdb ( medoid) 18.9574 6.06622 16.6264 115
cluster_5.pdb ( medoid) 16.4372 5.17119 13.7199 85
cluster_6.pdb ( medoid) 9.86163 9.02488 24.4605 89
cluster_7.pdb ( medoid) 9.61277 4.68127 9.11977 45
cluster_8.pdb ( medoid) 7.19005 9.45751 24.2734 68
cluster_9.pdb ( medoid) 5.21523 8.05334 24.8523 42
cluster_10.pdb ( medoid) 2.29943 12.1769 22.9316 28
Laboratory of Theory of Biopolymers 2015