Project name: 1n7f bound default 3 runB ATVRTYSC ss: CCCEEEEC

Status: done

submitted: 2015-02-23 11:19:02, status changed: 2015-03-13 10:50:18

Project settings
Protein sequence(s) AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ input pdb
Peptide sequence ATVRTYSC
Simulation mc cycles50
Peptide secondary structure CCCEEEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 56.6155 3.02037 10.6545 171
cluster_2.pdb ( medoid) 42.0112 3.26104 23.5421 137
cluster_3.pdb ( medoid) 18.8116 5.90062 17.8914 111
cluster_4.pdb ( medoid) 17.7603 6.19359 23.8875 110
cluster_5.pdb ( medoid) 16.9078 3.7261 12.4187 63
cluster_6.pdb ( medoid) 14.1566 7.06382 20.4094 100
cluster_7.pdb ( medoid) 11.4044 9.90849 29.1216 113
cluster_8.pdb ( medoid) 10.7484 10.234 27.748 110
cluster_9.pdb ( medoid) 4.32211 10.6429 33.8013 46
cluster_10.pdb ( medoid) 3.37757 11.5468 33.0622 39
Laboratory of Theory of Biopolymers 2015