Project name: 2O9S unbound default 2 run A VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:57, status changed: 2015-03-13 10:50:20

Project settings
Protein sequence(s) GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPL input pdb
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.7106 3.92112 11.4428 191
cluster_2.pdb ( medoid) 37.607 3.32385 6.7139 125
cluster_3.pdb ( medoid) 27.8274 3.73732 8.06473 104
cluster_4.pdb ( medoid) 20.8253 7.92307 32.0123 165
cluster_5.pdb ( medoid) 18.2414 5.53687 19.1698 101
cluster_6.pdb ( medoid) 16.7066 4.90824 13.195 82
cluster_7.pdb ( medoid) 13.357 4.56688 9.7067 61
cluster_8.pdb ( medoid) 11.0835 8.02995 30.7886 89
cluster_9.pdb ( medoid) 9.18578 3.26592 5.66031 30
cluster_10.pdb ( medoid) 6.30988 8.24105 22.058 52
Laboratory of Theory of Biopolymers 2015