Project name: 1LF7 unbound default 3 run A LRYDSTAERLY ss: CCEECCCCEEC

Status: done

submitted: 2015-02-25 18:47:41, status changed: 2015-03-13 10:50:40

Project settings
Protein sequence(s) ASPISTIQPKANFDAQQFAGTWLLVAVGSAGRRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFCEAADQFHVLDEV input pdb
Peptide sequence LRYDSTAERLY
Simulation mc cycles50
Peptide secondary structure CCEECCCCEEC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 81.2361 1.26791 21.9698 103
cluster_2.pdb ( medoid) 53.7851 3.9788 23.4638 214
cluster_3.pdb ( medoid) 50.483 3.6646 9.73136 185
cluster_4.pdb ( medoid) 27.8266 4.52805 9.67947 126
cluster_5.pdb ( medoid) 21.4269 4.01364 23.5529 86
cluster_6.pdb ( medoid) 20.8176 4.65952 26.8797 97
cluster_7.pdb ( medoid) 4.92325 15.2338 34.4284 75
cluster_8.pdb ( medoid) 3.7669 11.1498 24.3917 42
cluster_9.pdb ( medoid) 3.06441 12.0741 28.1833 37
cluster_10.pdb ( medoid) 2.55532 13.6969 26.7368 35
Laboratory of Theory of Biopolymers 2015