Project name: C-C_26-49

Status: done

submitted: 2017-12-07 17:22:55, status changed: 2017-12-07 18:19:13

Project settings
Protein sequence(s) SDEDLLKAVRLIKFLYQSNPPPNPLGTRQARRNRRRRWRERQRQIHSISERILSTYLG input pdb
Peptide sequence NPPPNPLGTRQARRNRRRRWRERQR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCHHHHHHHHHHHHHHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 17.6901 7.91404 24.4135 140
cluster_2.pdb ( medoid) 17.4747 8.81273 32.3006 154
cluster_3.pdb ( medoid) 16.5883 6.63117 21.4273 110
cluster_4.pdb ( medoid) 15.723 5.9149 22.793 93
cluster_5.pdb ( medoid) 11.6581 11.7515 23.6058 137
cluster_6.pdb ( medoid) 11.2184 5.79404 20.5356 65
cluster_7.pdb ( medoid) 11.0949 9.19339 18.7212 102
cluster_8.pdb ( medoid) 9.76092 10.5523 20.3845 103
cluster_9.pdb ( medoid) 5.11673 9.77187 21.8355 50
cluster_10.pdb ( medoid) 4.19747 10.959 20.2923 46

 
Laboratory of Theory of Biopolymers 2015