Project name: DmelSvB_model4_420aa_Dmel_mlpt1

Status: done

submitted: 2018-10-11 15:03:59, status changed: 2018-10-13 08:16:47

Project settings
Peptide sequence MAAYLDPTGQY
Simulation mc cycles200
Peptide secondary structure psipred CCEEECCCCCC
Unlikely to bind regions
35:A - 420:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.4972 2.87346 29.9978 102
cluster_2.pdb ( medoid) 16.2109 1.60386 2.77268 26
cluster_3.pdb ( medoid) 13.7043 2.77285 15.8122 38
cluster_4.pdb ( medoid) 4.92105 7.1123 33.6292 35
cluster_5.pdb ( medoid) 4.17226 9.82681 35.9837 41
cluster_6.pdb ( medoid) 3.68762 2.16942 3.6088 8
cluster_7.pdb ( medoid) 3.1362 15.624 46.8285 49
cluster_8.pdb ( medoid) 2.87848 11.4644 20.3684 33
cluster_9.pdb ( medoid) 2.4414 12.6977 27.2209 31
cluster_10.pdb ( medoid) 1.77544 10.1384 18.3952 18

Laboratory of Theory of Biopolymers 2015