Project name: 17df4f6a81cbc38

Status: done

submitted: 2018-10-09 06:53:02, status changed: 2018-10-09 18:13:34

Project settings
Protein sequence(s) EFRERLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFAKVYPPVPAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTIQHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV input pdb
Peptide sequence ARTKQTARKSTG
Simulation mc cycles50
Peptide secondary structure psipred CHHHHHHHHHCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 21.8647 8.50688 35.4975 186
cluster_2.pdb ( medoid) 19.3392 8.16995 35.7645 158
cluster_3.pdb ( medoid) 16.4387 4.37991 19.3305 72
cluster_4.pdb ( medoid) 10.4322 14.6662 42.865 153
cluster_5.pdb ( medoid) 9.79856 13.6755 40.5693 134
cluster_6.pdb ( medoid) 9.27483 11.8601 36.8761 110
cluster_7.pdb ( medoid) 6.59486 13.4954 42.9717 89
cluster_8.pdb ( medoid) 5.03236 7.35242 21.1005 37
cluster_9.pdb ( medoid) 2.49577 10.4176 24.3766 26
cluster_10.pdb ( medoid) 1.98843 17.6018 34.2146 35

 
Laboratory of Theory of Biopolymers 2015