Project name: PP1_activatingPeptide

Status: done

submitted: 2018-01-11 14:28:05, status changed: 2018-01-11 19:20:19

Project settings
Peptide sequence NARVTFAEAAEII
Simulation mc cycles50
Peptide secondary structure psipred CCHHHHHHHHHHC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.9861 3.15905 32.7907 120
cluster_2.pdb ( medoid) 27.5877 6.45215 48.1516 178
cluster_3.pdb ( medoid) 17.0571 9.49748 48.1121 162
cluster_4.pdb ( medoid) 16.6505 3.60351 15.5563 60
cluster_5.pdb ( medoid) 12.8247 6.15998 33.4314 79
cluster_6.pdb ( medoid) 12.5528 14.3395 46.2328 180
cluster_7.pdb ( medoid) 5.30671 7.91451 42.601 42
cluster_8.pdb ( medoid) 3.89503 15.661 46.7234 61
cluster_9.pdb ( medoid) 3.86881 22.2291 56.5813 86
cluster_10.pdb ( medoid) 3.17826 10.0684 34.7708 32

Laboratory of Theory of Biopolymers 2015