Project name: 1IE9 unbound default 2 run A KNHPMLMNLLKD ss: CCCHHHHHHHCC

Status: done

submitted: 2015-02-25 18:46:57, status changed: 2015-03-13 10:51:23

Project settings
Peptide sequence KNHPMLMNLLKD
Simulation mc cycles50
Peptide secondary structure CCCHHHHHHHCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 19.8698 5.43538 26.1024 108
cluster_2.pdb ( medoid) 18.9348 6.76003 23.3967 128
cluster_3.pdb ( medoid) 18.4661 8.28547 19.3083 153
cluster_4.pdb ( medoid) 15.1439 10.8955 33.7061 165
cluster_5.pdb ( medoid) 13.3767 6.87763 14.3735 92
cluster_6.pdb ( medoid) 8.6956 10.3501 20.5304 90
cluster_7.pdb ( medoid) 8.68624 8.63434 28.5837 75
cluster_8.pdb ( medoid) 8.17959 12.1033 37.8894 99
cluster_9.pdb ( medoid) 3.16057 14.8707 28.9253 47
cluster_10.pdb ( medoid) 3.03356 14.1748 29.0481 43
Laboratory of Theory of Biopolymers 2015