Project name: 198bb04f82e4e71

Status: done

submitted: 2017-09-14 04:32:02, status changed: 2017-09-14 05:31:31

Project settings
Protein sequence(s) DRAHYNIVTFCCKCDSTLRLCVQSTHVDIRTLEDLLMGTLGIVCPICSQKP input pdb
Peptide sequence SACPKGLDWCGG
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.4647 4.62431 21.6363 164
cluster_2.pdb ( medoid) 17.1156 6.89431 29.4405 118
cluster_3.pdb ( medoid) 15.5157 5.99392 17.8977 93
cluster_4.pdb ( medoid) 14.0587 7.75323 32.2458 109
cluster_5.pdb ( medoid) 12.4668 7.86089 24.2235 98
cluster_6.pdb ( medoid) 11.4034 9.29547 33.2134 106
cluster_7.pdb ( medoid) 10.806 8.7914 28.3242 95
cluster_8.pdb ( medoid) 10.3378 6.67456 29.5793 69
cluster_9.pdb ( medoid) 6.33529 10.1021 36.6521 64
cluster_10.pdb ( medoid) 4.73036 17.7576 44.3953 84

 
Laboratory of Theory of Biopolymers 2015