Project name: CCL2

Status: done

submitted: 2018-01-02 19:00:47, status changed: 2018-01-02 20:14:51

Project settings
Protein sequence(s) INAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQ input pdb
Peptide sequence NQHTPR
Simulation mc cycles100
Peptide secondary structure CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 50.659 2.17138 11.0055 110
cluster_2.pdb ( medoid) 42.2794 6.69357 27.2789 283
cluster_3.pdb ( medoid) 39.4568 3.01596 13.6666 119
cluster_4.pdb ( medoid) 23.0217 6.29841 18.8953 145
cluster_5.pdb ( medoid) 22.2239 2.5198 8.8567 56
cluster_6.pdb ( medoid) 20.1987 7.37669 27.8752 149
cluster_7.pdb ( medoid) 8.57132 8.0501 18.2336 69
cluster_8.pdb ( medoid) 2.38532 12.9962 28.5348 31
cluster_9.pdb ( medoid) 1.95546 9.71641 21.3833 19
cluster_10.pdb ( medoid) 1.60136 11.8649 24.1986 19

 
Laboratory of Theory of Biopolymers 2015