Project name: 1UM5 unbound default HL GTSSPSAD ss: CCCCCCCC

Status: done

submitted: 2015-02-20 17:44:31, status changed: 2015-03-13 10:51:48

Project settings
Peptide sequence GTSSPSAD
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 22.7217 8.36204 42.4715 190
cluster_2.pdb ( medoid) 22.1451 6.90898 19.7914 153
cluster_3.pdb ( medoid) 17.034 5.69451 34.1051 97
cluster_4.pdb ( medoid) 17.0109 7.05429 42.4634 120
cluster_5.pdb ( medoid) 15.3107 7.31512 29.7878 112
cluster_6.pdb ( medoid) 14.6659 4.50023 14.1054 66
cluster_7.pdb ( medoid) 7.11387 14.7599 38.187 105
cluster_8.pdb ( medoid) 5.43516 11.2232 39.3758 61
cluster_9.pdb ( medoid) 4.44532 14.6221 35.1643 65
cluster_10.pdb ( medoid) 2.29596 13.502 31.37 31
Laboratory of Theory of Biopolymers 2015