Project name: 2qos bound default C LRYDSTAERLY ss: CCEECCCCEEC

Status: done

submitted: 2015-02-19 18:28:31, status changed: 2015-03-13 10:51:59

Project settings
Peptide sequence LRYDSTAERLY
Simulation mc cycles50
Peptide secondary structure CCEECCCCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_4 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 41.6534 2.78489 27.8982 116
cluster_2.pdb ( medoid) 35.9011 3.11968 6.91963 112
cluster_3.pdb ( medoid) 35.3476 3.30998 27.7695 117
cluster_4.pdb ( medoid) 31.1289 3.43732 28.2974 107
cluster_5.pdb ( medoid) 22.9774 6.96335 43.2113 160
cluster_6.pdb ( medoid) 20.2696 7.79491 44.8733 158
cluster_7.pdb ( medoid) 12.3225 6.97911 32.1346 86
cluster_8.pdb ( medoid) 11.2609 5.50579 21.542 62
cluster_9.pdb ( medoid) 4.03551 9.91201 46.9593 40
cluster_10.pdb ( medoid) 1.91212 21.9651 43.4555 42
Laboratory of Theory of Biopolymers 2015