Project name: 1c2eaf60dd40972

Status: done

submitted: 2018-07-11 10:18:20, status changed: 2018-07-24 20:17:45

Project settings
Protein sequence(s) KATMQCGENEKYDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVCEEGFYRNKDDKCVSAEDCELDNMDFIYPGTRNP input pdb
Peptide sequence HPQFEK
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 38.846 4.55645 16.935 177
cluster_2.pdb ( medoid) 25.5636 5.71123 28.212 146
cluster_3.pdb ( medoid) 24.2956 5.0215 26.8637 122
cluster_4.pdb ( medoid) 20.4618 6.64653 18.2031 136
cluster_5.pdb ( medoid) 13.5313 6.35563 25.9531 86
cluster_6.pdb ( medoid) 13.4781 8.08718 24.6482 109
cluster_7.pdb ( medoid) 11.9156 6.62995 23.7404 79
cluster_8.pdb ( medoid) 7.31069 7.11287 20.1399 52
cluster_9.pdb ( medoid) 7.13165 5.6088 19.3194 40
cluster_10.pdb ( medoid) 4.24632 12.4814 30.4777 53

 
Laboratory of Theory of Biopolymers 2015