Project name: 1V49 unbound default 2 run A GGDDDWTHLS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:59, status changed: 2015-03-13 10:52:08

Project settings
Peptide sequence GGDDDWTHLS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 58.4003 3.51025 14.6185 205
cluster_2.pdb ( medoid) 30.7592 5.29922 21.585 163
cluster_3.pdb ( medoid) 22.8119 7.10155 25.3657 162
cluster_4.pdb ( medoid) 21.9367 2.8719 6.05624 63
cluster_5.pdb ( medoid) 19.5138 6.04701 15.2501 118
cluster_6.pdb ( medoid) 18.2831 3.82866 15.116 70
cluster_7.pdb ( medoid) 16.6906 7.60905 21.5273 127
cluster_8.pdb ( medoid) 3.50369 11.4165 25.9724 40
cluster_9.pdb ( medoid) 2.75354 11.2582 21.7335 31
cluster_10.pdb ( medoid) 1.8067 11.6234 27.1909 21
Laboratory of Theory of Biopolymers 2015