Project name: 2LNS_B1

Status: done

submitted: 2018-10-11 13:53:41, status changed: 2018-10-12 00:19:26

Project settings
Peptide sequence FPTIYYFS
Simulation mc cycles150
Peptide secondary structure CCCEEECC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.2307 3.94542 30.0434 139
cluster_2.pdb ( medoid) 32.0055 3.43691 29.0615 110
cluster_3.pdb ( medoid) 26.1936 6.03201 34.2908 158
cluster_4.pdb ( medoid) 23.2753 5.67124 32.8495 132
cluster_5.pdb ( medoid) 15.3923 6.1719 16.8529 95
cluster_6.pdb ( medoid) 15.1242 6.21522 41.5749 94
cluster_7.pdb ( medoid) 11.2983 7.43475 41.2059 84
cluster_8.pdb ( medoid) 6.15793 11.8546 34.6506 73
cluster_9.pdb ( medoid) 4.06137 18.4667 39.8354 75
cluster_10.pdb ( medoid) 3.27487 12.2142 27.5463 40

Laboratory of Theory of Biopolymers 2015