Project name: c97820e3a516f22

Status: done

submitted: 2018-10-11 13:48:45, status changed: 2018-10-12 12:45:33

Project settings
Protein sequence(s) IDPFTPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTELIDPFTPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL input pdb
Peptide sequence PTTIYY
Simulation mc cycles150
Peptide secondary structure CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.4634 2.67994 7.46871 87
cluster_2.pdb ( medoid) 22.0865 4.70875 23.4466 104
cluster_3.pdb ( medoid) 19.455 5.91107 16.8272 115
cluster_4.pdb ( medoid) 18.3529 4.84936 15.3041 89
cluster_5.pdb ( medoid) 15.8246 10.4268 38.1669 165
cluster_6.pdb ( medoid) 11.3072 11.8509 36.7135 134
cluster_7.pdb ( medoid) 9.29355 13.6654 40.4631 127
cluster_8.pdb ( medoid) 7.13485 11.7732 35.9626 84
cluster_9.pdb ( medoid) 6.4204 5.60713 11.5457 36
cluster_10.pdb ( medoid) 4.19214 14.0739 31.9771 59

 
Laboratory of Theory of Biopolymers 2015