Project name: 2o9v bound default 2 runA VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:42, status changed: 2015-03-13 10:52:26

Project settings
Protein sequence(s) GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPL input pdb
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 25.2893 5.69412 22.0217 144
cluster_2.pdb ( medoid) 23.0601 4.11967 27.2584 95
cluster_3.pdb ( medoid) 18.9516 8.28425 26.9477 157
cluster_4.pdb ( medoid) 18.4813 6.49304 17.5284 120
cluster_5.pdb ( medoid) 18.1939 4.45203 11.0367 81
cluster_6.pdb ( medoid) 13.4255 6.92712 16.7526 93
cluster_7.pdb ( medoid) 11.6311 6.19028 16.2576 72
cluster_8.pdb ( medoid) 9.85613 11.262 29.123 111
cluster_9.pdb ( medoid) 5.74389 11.1423 23.0658 64
cluster_10.pdb ( medoid) 4.26432 14.7738 28.8113 63
Laboratory of Theory of Biopolymers 2015