Project name: 1V49 unbound default A GGDDDWTHLS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-20 17:44:51, status changed: 2015-03-13 10:52:34

Project settings
Protein sequence(s) MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG input pdb
Peptide sequence GGDDDWTHLS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.4755 7.4486 33.0289 227
cluster_2.pdb ( medoid) 22.2531 4.80831 17.4394 107
cluster_3.pdb ( medoid) 21.2253 6.8786 18.1352 146
cluster_4.pdb ( medoid) 20.1209 5.46694 15.5724 110
cluster_5.pdb ( medoid) 14.5718 6.72532 16.3232 98
cluster_6.pdb ( medoid) 10.7142 9.80007 20.7648 105
cluster_7.pdb ( medoid) 8.4901 7.42041 18.7116 63
cluster_8.pdb ( medoid) 7.70497 9.34462 21.7367 72
cluster_9.pdb ( medoid) 4.41349 9.74286 26.159 43
cluster_10.pdb ( medoid) 3.19786 9.06857 19.551 29
Laboratory of Theory of Biopolymers 2015