Project name: 2ho2 bound default A PPPPPPPPPL ss: CCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:27, status changed: 2015-03-13 10:52:35

Project settings
Protein sequence(s) SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGR input pdb
Peptide sequence PPPPPPPPPL
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
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model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.8642 7.79512 21.0588 225
cluster_2.pdb ( medoid) 27.4331 4.37428 17.6255 120
cluster_3.pdb ( medoid) 23.9247 3.46923 14.5375 83
cluster_4.pdb ( medoid) 21.3122 3.19066 8.66907 68
cluster_5.pdb ( medoid) 17.0767 6.85146 20.5734 117
cluster_6.pdb ( medoid) 15.2818 6.87091 17.275 105
cluster_7.pdb ( medoid) 15.0446 6.18161 19.7187 93
cluster_8.pdb ( medoid) 10.8354 7.38317 16.8205 80
cluster_9.pdb ( medoid) 9.18278 4.90048 12.7662 45
cluster_10.pdb ( medoid) 5.59328 11.4423 23.3357 64
Laboratory of Theory of Biopolymers 2015