Project name: 2ipu bound default HL AEFRHDS ss: CECCCCC

Status: done

submitted: 2015-02-19 18:28:28, status changed: 2015-03-13 10:52:58

Project settings
Peptide sequence AEFRHDS
Simulation mc cycles50
Peptide secondary structure CECCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 16.9068 10.1734 40.8067 172
cluster_2.pdb ( medoid) 16.4381 9.61181 36.5676 158
cluster_3.pdb ( medoid) 13.8064 10.5748 39.9339 146
cluster_4.pdb ( medoid) 10.0113 8.69022 26.0493 87
cluster_5.pdb ( medoid) 9.10946 7.24522 26.4761 66
cluster_6.pdb ( medoid) 8.43964 6.75384 20.399 57
cluster_7.pdb ( medoid) 6.94717 10.9397 35.8431 76
cluster_8.pdb ( medoid) 5.66076 12.8958 40.1796 73
cluster_9.pdb ( medoid) 3.80608 11.8232 28.3944 45
cluster_10.pdb ( medoid) 1.63079 12.264 24.5046 20
Laboratory of Theory of Biopolymers 2015