Project name: 2vj0 bound default 2 runA PKGWVTFE ss: CCCCCCCC

Status: done

submitted: 2015-02-23 11:18:45, status changed: 2015-03-13 10:53:11

Project settings
Peptide sequence PKGWVTFE
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.5449 4.22329 14.0231 129
cluster_2.pdb ( medoid) 29.7478 3.96669 15.3087 118
cluster_3.pdb ( medoid) 29.439 3.80448 33.4129 112
cluster_4.pdb ( medoid) 17.7288 8.23518 20.4299 146
cluster_5.pdb ( medoid) 17.0362 4.10891 18.4987 70
cluster_6.pdb ( medoid) 14.1088 7.72567 26.2038 109
cluster_7.pdb ( medoid) 13.182 9.93779 32.3422 131
cluster_8.pdb ( medoid) 9.52343 9.34537 23.0838 89
cluster_9.pdb ( medoid) 6.17801 10.6831 34.0903 66
cluster_10.pdb ( medoid) 2.61327 11.4799 24.6958 30
Laboratory of Theory of Biopolymers 2015