Project name: 2vj0 bound default 2 runA PKGWVTFE ss: CCCCCCCC

Status: done

submitted: 2015-02-23 11:18:45, status changed: 2015-03-13 10:53:11

Project settings
Protein sequence(s) ILAPLAPGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF input pdb
Peptide sequence PKGWVTFE
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_4 View
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model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 30.5449 4.22329 14.0231 129
cluster_2.pdb ( medoid) 29.7478 3.96669 15.3087 118
cluster_3.pdb ( medoid) 29.439 3.80448 33.4129 112
cluster_4.pdb ( medoid) 17.7288 8.23518 20.4299 146
cluster_5.pdb ( medoid) 17.0362 4.10891 18.4987 70
cluster_6.pdb ( medoid) 14.1088 7.72567 26.2038 109
cluster_7.pdb ( medoid) 13.182 9.93779 32.3422 131
cluster_8.pdb ( medoid) 9.52343 9.34537 23.0838 89
cluster_9.pdb ( medoid) 6.17801 10.6831 34.0903 66
cluster_10.pdb ( medoid) 2.61327 11.4799 24.6958 30
Laboratory of Theory of Biopolymers 2015