Project name: 1YEJ unbound default 3 run HL AEFRHDS ss: CCCCCCC

Status: done

submitted: 2015-02-25 18:47:40, status changed: 2015-03-13 10:53:41

Project settings
Peptide sequence AEFRHDS
Simulation mc cycles50
Peptide secondary structure CCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 16.6846 7.19225 34.1021 120
cluster_2.pdb ( medoid) 16.5852 7.77804 39.2143 129
cluster_3.pdb ( medoid) 16.5835 4.88439 23.2251 81
cluster_4.pdb ( medoid) 16.2118 10.8563 45.3709 176
cluster_5.pdb ( medoid) 12.5416 5.0233 32.7052 63
cluster_6.pdb ( medoid) 11.3939 8.60112 22.6233 98
cluster_7.pdb ( medoid) 9.75929 14.2428 37.6485 139
cluster_8.pdb ( medoid) 5.90839 11.5091 29.4659 68
cluster_9.pdb ( medoid) 4.71557 12.9359 42.9511 61
cluster_10.pdb ( medoid) 4.38736 14.8153 32.1376 65
Laboratory of Theory of Biopolymers 2015