Project name: 2H14 unbound default A ARTKQ ss: CCCCC

Status: done

submitted: 2015-02-20 17:44:46, status changed: 2015-03-13 10:53:46

Project settings
Protein sequence(s) KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC input pdb
Peptide sequence ARTKQ
Simulation mc cycles50
Peptide secondary structure CCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 38.8553 3.68032 14.0849 143
cluster_2.pdb ( medoid) 21.7257 10.6786 31.6579 232
cluster_3.pdb ( medoid) 16.7698 5.12825 14.5186 86
cluster_4.pdb ( medoid) 15.3852 7.86471 35.9315 121
cluster_5.pdb ( medoid) 14.3287 5.5832 30.643 80
cluster_6.pdb ( medoid) 13.635 8.06745 29.8002 110
cluster_7.pdb ( medoid) 13.1559 5.54886 29.4044 73
cluster_8.pdb ( medoid) 5.63381 11.1825 33.3506 63
cluster_9.pdb ( medoid) 3.75195 15.4586 35.113 58
cluster_10.pdb ( medoid) 1.9125 17.7778 43.6152 34
Laboratory of Theory of Biopolymers 2015