Project name: 2zjd bound default 3 runA GGDDDWTHLS ss: CCCCCCEECC

Status: done

submitted: 2015-02-23 11:19:19, status changed: 2015-03-13 10:54:02

Project settings
Peptide sequence GGDDDWTHLS
Simulation mc cycles50
Peptide secondary structure CCCCCCEECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 36.9824 2.56879 5.50346 95
cluster_2.pdb ( medoid) 31.9074 4.23099 25.5371 135
cluster_3.pdb ( medoid) 31.8131 7.41832 22.0631 236
cluster_4.pdb ( medoid) 22.9409 2.57182 5.88553 59
cluster_5.pdb ( medoid) 20.1584 4.76228 15.4682 96
cluster_6.pdb ( medoid) 18.9016 7.6184 18.7492 144
cluster_7.pdb ( medoid) 14.7061 6.52789 19.3343 96
cluster_8.pdb ( medoid) 7.11169 6.89006 15.0194 49
cluster_9.pdb ( medoid) 5.37988 10.9668 27.5018 59
cluster_10.pdb ( medoid) 4.52057 6.85754 16.5458 31
Laboratory of Theory of Biopolymers 2015