Project name: 1aqd_A-D_GGWNGPGPK

Status: done

submitted: 2023-06-02 08:48:07, status changed: 2023-06-03 01:48:22

Project settings
Peptide sequence GGWNGPGPK
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.0135 1.91101 13.6587 65
cluster_2.pdb ( medoid) 30.1439 5.60644 29.6772 169
cluster_3.pdb ( medoid) 27.2416 3.30377 14.6927 90
cluster_4.pdb ( medoid) 19.9668 6.21031 35.4334 124
cluster_5.pdb ( medoid) 18.2662 2.13509 23.7624 39
cluster_6.pdb ( medoid) 15.1803 7.83911 37.6383 119
cluster_7.pdb ( medoid) 14.7035 7.75327 21.1687 114
cluster_8.pdb ( medoid) 12.3962 10.3257 29.9006 128
cluster_9.pdb ( medoid) 10.399 8.75087 21.0431 91
cluster_10.pdb ( medoid) 7.44886 8.18917 35.2188 61