Project name: 5lwm7

Status: done

submitted: 2023-06-02 07:43:35, status changed: 2023-06-02 14:34:45

Project settings
Peptide sequence YRLKYTFGV
Simulation mc cycles50
Peptide secondary structure psipred CCCEEECCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 38.3369 2.50411 7.38279 96
cluster_2.pdb ( medoid) 29.3088 4.74261 31.9889 139
cluster_3.pdb ( medoid) 26.7571 6.80194 40.2213 182
cluster_4.pdb ( medoid) 18.5908 5.00248 14.1971 93
cluster_5.pdb ( medoid) 16.4626 9.0508 34.6939 149
cluster_6.pdb ( medoid) 13.4594 7.57834 35.4602 102
cluster_7.pdb ( medoid) 8.56285 5.13848 17.4409 44
cluster_8.pdb ( medoid) 7.66707 13.1732 32.9475 101
cluster_9.pdb ( medoid) 5.66986 13.2278 30.1226 75
cluster_10.pdb ( medoid) 3.31624 5.72938 10.3506 19