CABS-dock: 5lwm7

Project name: 5lwm7

Status: done

submitted: 2023-06-02 07:43:35, status changed: 2023-06-02 14:34:45

Project settings

Protein sequence(s)	PTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRALAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGSERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS input pdb
Peptide sequence	YRLKYTFGV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.3369	2.50411	7.38279	96
cluster_2.pdb ( medoid)	29.3088	4.74261	31.9889	139
cluster_3.pdb ( medoid)	26.7571	6.80194	40.2213	182
cluster_4.pdb ( medoid)	18.5908	5.00248	14.1971	93
cluster_5.pdb ( medoid)	16.4626	9.0508	34.6939	149
cluster_6.pdb ( medoid)	13.4594	7.57834	35.4602	102
cluster_7.pdb ( medoid)	8.56285	5.13848	17.4409	44
cluster_8.pdb ( medoid)	7.66707	13.1732	32.9475	101
cluster_9.pdb ( medoid)	5.66986	13.2278	30.1226	75
cluster_10.pdb ( medoid)	3.31624	5.72938	10.3506	19