Project name: 1eg4 bound default A NMTPYRSPPPYVP ss: CCCCCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:12, status changed: 2015-03-13 10:54:33

Project settings
Peptide sequence NMTPYRSPPPYVP
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
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model_6 View
model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 19.9512 7.46821 26.6965 149
cluster_2.pdb ( medoid) 17.3671 9.90377 40.5691 172
cluster_3.pdb ( medoid) 15.1221 7.14187 20.7663 108
cluster_4.pdb ( medoid) 11.838 5.15289 29.2468 61
cluster_5.pdb ( medoid) 11.4934 11.3109 36.1649 130
cluster_6.pdb ( medoid) 11.4245 9.01574 26.4518 103
cluster_7.pdb ( medoid) 8.82996 11.0986 29.5165 98
cluster_8.pdb ( medoid) 6.42247 9.0308 37.8622 58
cluster_9.pdb ( medoid) 6.06346 10.555 29.6496 64
cluster_10.pdb ( medoid) 4.47091 12.7491 30.2073 57
Laboratory of Theory of Biopolymers 2015