Project name: 1LF7 unbound default 2 run A LRYDSTAERLY ss: CCEECCCCEEC

Status: done

submitted: 2015-02-25 18:46:58, status changed: 2015-03-13 10:54:36

Project settings
Peptide sequence LRYDSTAERLY
Simulation mc cycles50
Peptide secondary structure CCEECCCCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_4 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.9566 1.48051 5.34156 71
cluster_2.pdb ( medoid) 25.1504 4.33393 22.1626 109
cluster_3.pdb ( medoid) 24.9162 4.65561 26.7492 116
cluster_4.pdb ( medoid) 24.2472 5.93883 17.7152 144
cluster_5.pdb ( medoid) 22.5015 1.77766 18.3941 40
cluster_6.pdb ( medoid) 16.0161 7.43002 40.615 119
cluster_7.pdb ( medoid) 10.702 12.9882 32.2388 139
cluster_8.pdb ( medoid) 7.36678 13.1672 44.5397 97
cluster_9.pdb ( medoid) 7.03113 15.5025 35.163 109
cluster_10.pdb ( medoid) 5.41622 10.3393 35.6777 56
Laboratory of Theory of Biopolymers 2015