Project name: 1aqd_A-D_VGNNTRVMCR

Status: done

submitted: 2023-06-02 08:55:02, status changed: 2023-06-03 01:47:57

Project settings
Peptide sequence VGNNTRVMCR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCEECCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.1891 2.67931 19.3043 105
cluster_2.pdb ( medoid) 29.3178 3.54733 18.2832 104
cluster_3.pdb ( medoid) 20.5908 6.84771 18.9833 141
cluster_4.pdb ( medoid) 20.566 4.76514 9.54133 98
cluster_5.pdb ( medoid) 16.9435 8.67587 21.9632 147
cluster_6.pdb ( medoid) 16.9072 6.44696 19.5669 109
cluster_7.pdb ( medoid) 14.789 5.74752 14.8649 85
cluster_8.pdb ( medoid) 5.37558 5.02271 13.1654 27
cluster_9.pdb ( medoid) 5.16679 11.032 46.7681 57
cluster_10.pdb ( medoid) 2.58118 19.3709 43.2202 50