Project name: 1D1Z unbound default C KSLTIYAQVQK ss: CCCCCCCCCCC

Status: done

submitted: 2015-02-20 17:44:32, status changed: 2015-03-13 10:55:01

Project settings
Peptide sequence KSLTIYAQVQK
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_4 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 49.4207 2.67095 27.0238 132
cluster_2.pdb ( medoid) 26.2364 7.20374 28.7663 189
cluster_3.pdb ( medoid) 19.11 6.22711 24.5596 119
cluster_4.pdb ( medoid) 17.0644 7.03219 28.6723 120
cluster_5.pdb ( medoid) 16.9955 6.943 19.255 118
cluster_6.pdb ( medoid) 12.5545 5.17743 16.1017 65
cluster_7.pdb ( medoid) 11.8962 7.22922 25.2545 86
cluster_8.pdb ( medoid) 10.4291 5.75311 19.5715 60
cluster_9.pdb ( medoid) 5.87741 6.80572 13.0684 40
cluster_10.pdb ( medoid) 4.35607 16.2991 38.0939 71
Laboratory of Theory of Biopolymers 2015