Project name: 2p54 bound default A ARHKILHRLLQE ss: CCCHHHHHHHHC

Status: done

submitted: 2015-02-19 18:28:31, status changed: 2015-03-13 10:55:26

Project settings
Protein sequence(s) DLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY input pdb
Peptide sequence ARHKILHRLLQE
Simulation mc cycles50
Peptide secondary structure CCCHHHHHHHHC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
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replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.6018 1.85384 6.12294 66
cluster_2.pdb ( medoid) 34.044 1.58618 6.47427 54
cluster_3.pdb ( medoid) 31.259 5.27847 18.5188 165
cluster_4.pdb ( medoid) 24.409 4.58848 9.49743 112
cluster_5.pdb ( medoid) 22.8662 3.54235 10.1229 81
cluster_6.pdb ( medoid) 19.4267 5.30197 24.2537 103
cluster_7.pdb ( medoid) 14.1752 13.7564 39.1718 195
cluster_8.pdb ( medoid) 12.0476 5.89327 35.0229 71
cluster_9.pdb ( medoid) 9.63748 12.9702 37.8711 125
cluster_10.pdb ( medoid) 6.44222 4.34633 14.3611 28
Laboratory of Theory of Biopolymers 2015