Project name: 2p54 bound default A ARHKILHRLLQE ss: CCCHHHHHHHHC

Status: done

submitted: 2015-02-19 18:28:31, status changed: 2015-03-13 10:55:26

Project settings
Peptide sequence ARHKILHRLLQE
Simulation mc cycles50
Peptide secondary structure CCCHHHHHHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 35.6018 1.85384 6.12294 66
cluster_2.pdb ( medoid) 34.044 1.58618 6.47427 54
cluster_3.pdb ( medoid) 31.259 5.27847 18.5188 165
cluster_4.pdb ( medoid) 24.409 4.58848 9.49743 112
cluster_5.pdb ( medoid) 22.8662 3.54235 10.1229 81
cluster_6.pdb ( medoid) 19.4267 5.30197 24.2537 103
cluster_7.pdb ( medoid) 14.1752 13.7564 39.1718 195
cluster_8.pdb ( medoid) 12.0476 5.89327 35.0229 71
cluster_9.pdb ( medoid) 9.63748 12.9702 37.8711 125
cluster_10.pdb ( medoid) 6.44222 4.34633 14.3611 28
Laboratory of Theory of Biopolymers 2015