Project name: 4i5b_ABDE_VGNNTRVMCR

Status: done

submitted: 2023-06-03 09:02:26, status changed: 2023-06-04 12:24:52

Project settings
Peptide sequence VGNNTRVMCR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCEECCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.7163 3.80924 12.887 197
cluster_2.pdb ( medoid) 47.8598 4.0953 16.2838 196
cluster_3.pdb ( medoid) 29.329 4.33018 14.9941 127
cluster_4.pdb ( medoid) 19.5078 5.58752 31.6096 109
cluster_5.pdb ( medoid) 13.9683 13.1011 49.8401 183
cluster_6.pdb ( medoid) 2.8114 7.11389 14.6552 20
cluster_7.pdb ( medoid) 2.58653 19.7175 49.4362 51
cluster_8.pdb ( medoid) 2.56419 16.7694 44.3541 43
cluster_9.pdb ( medoid) 2.42936 21.4048 51.4115 52
cluster_10.pdb ( medoid) 2.38135 9.23845 17.0618 22