Project name: MYCMYB_IT2

Status: done

submitted: 2018-07-11 15:32:40, status changed: 2018-07-26 06:43:40

Project settings
Simulation mc cycles200
Peptide secondary structure psipred CCCCHHHHHHHHHHHHHHHHCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 44.7787 2.52352 11.3514 113
cluster_2.pdb ( medoid) 34.2616 4.37808 13.1779 150
cluster_3.pdb ( medoid) 27.0163 3.96057 17.8018 107
cluster_4.pdb ( medoid) 26.3992 5.64412 19.2862 149
cluster_5.pdb ( medoid) 24.2554 6.3491 24.121 154
cluster_6.pdb ( medoid) 21.5931 5.97413 14.8808 129
cluster_7.pdb ( medoid) 9.04972 5.63554 13.2934 51
cluster_8.pdb ( medoid) 8.83385 7.47126 17.0819 66
cluster_9.pdb ( medoid) 8.09892 6.9145 13.9586 56
cluster_10.pdb ( medoid) 4.10136 6.09554 11.2368 25

Laboratory of Theory of Biopolymers 2015