Project name: 2qos bound default 2 runC LRYDSTAERLY ss: CCEECCCCEEC

Status: done

submitted: 2015-02-23 11:18:44, status changed: 2015-03-13 10:55:45

Project settings
Peptide sequence LRYDSTAERLY
Simulation mc cycles50
Peptide secondary structure CCEECCCCEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 53.3872 1.25498 26.762 67
cluster_2.pdb ( medoid) 48.236 2.25972 26.3582 109
cluster_3.pdb ( medoid) 28.5626 4.44637 35.1617 127
cluster_4.pdb ( medoid) 25.6309 6.43755 43.2959 165
cluster_5.pdb ( medoid) 21.6676 3.87675 18.6282 84
cluster_6.pdb ( medoid) 20.2232 7.07108 38.5367 143
cluster_7.pdb ( medoid) 15.1908 3.15981 6.6106 48
cluster_8.pdb ( medoid) 12.812 9.21009 42.5795 118
cluster_9.pdb ( medoid) 11.3001 9.64595 44.3262 109
cluster_10.pdb ( medoid) 1.57237 19.0795 39.8406 30
Laboratory of Theory of Biopolymers 2015