Project name: 1UM5 unbound default 3 run HL GTSSPSAD ss: CCCCCCCC

Status: done

submitted: 2015-02-25 18:47:28, status changed: 2015-03-13 10:55:55

Project settings
Peptide sequence GTSSPSAD
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 49.0194 5.42642 33.5165 266
cluster_2.pdb ( medoid) 23.5259 4.93074 27.8114 116
cluster_3.pdb ( medoid) 17.2343 8.06529 38.2557 139
cluster_4.pdb ( medoid) 12.3282 10.3016 36.5824 127
cluster_5.pdb ( medoid) 10.1264 10.9614 39.0493 111
cluster_6.pdb ( medoid) 6.43041 6.37596 15.2801 41
cluster_7.pdb ( medoid) 5.35141 13.4544 34.8499 72
cluster_8.pdb ( medoid) 3.03955 14.8048 37.7443 45
cluster_9.pdb ( medoid) 2.83756 13.0394 32.3073 37
cluster_10.pdb ( medoid) 2.5637 17.9428 41.5129 46
Laboratory of Theory of Biopolymers 2015