Project name: Docking project

Status: done

submitted: 2023-06-02 09:02:08, status changed: 2023-06-02 22:31:12

Project settings
Peptide sequence SFGDGFADF
Simulation mc cycles50
Peptide secondary structure CCCCHHHHC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 59.1527 3.1275 27.9076 185
cluster_2.pdb ( medoid) 28.8696 5.5768 12.2343 161
cluster_3.pdb ( medoid) 27.0187 4.8855 28.2721 132
cluster_4.pdb ( medoid) 19.1339 7.36912 31.8201 141
cluster_5.pdb ( medoid) 13.1652 6.83619 34.7185 90
cluster_6.pdb ( medoid) 8.99329 9.78508 20.3878 88
cluster_7.pdb ( medoid) 5.46295 11.3492 27.8154 62
cluster_8.pdb ( medoid) 4.86047 10.4928 24.3779 51
cluster_9.pdb ( medoid) 4.63339 10.1438 21.4687 47
cluster_10.pdb ( medoid) 4.28637 10.0318 24.1258 43