Project name: 34127a22c3a8df5

Status: done

submitted: 2017-12-06 06:09:01, status changed: 2017-12-06 09:07:16

Project settings
Protein sequence(s) APVSIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAVVHGQTGMLLTGSNAKAQDLGTIPGDCGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTLEALEFQ input pdb
Peptide sequence NSLKVLG
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.2442 3.43677 21.3951 128
cluster_2.pdb ( medoid) 27.2972 4.79903 23.5831 131
cluster_3.pdb ( medoid) 21.9955 5.36473 19.8876 118
cluster_4.pdb ( medoid) 20.6254 5.33323 34.195 110
cluster_5.pdb ( medoid) 17.9383 4.79421 15.2062 86
cluster_6.pdb ( medoid) 14.7226 14.1279 36.6859 208
cluster_7.pdb ( medoid) 6.57899 7.59995 20.272 50
cluster_8.pdb ( medoid) 5.55663 13.6774 33.7348 76
cluster_9.pdb ( medoid) 5.06616 13.6198 43.1461 69
cluster_10.pdb ( medoid) 2.70075 8.88642 21.1729 24

 
Laboratory of Theory of Biopolymers 2015