Project name: 3RDH unbound default 2 run A GHGQGLLDALDLAS ss: CCCCCHHHHCCCCC

Status: done

submitted: 2015-02-25 18:46:57, status changed: 2015-03-13 10:56:04

Project settings
Peptide sequence GHGQGLLDALDLAS
Simulation mc cycles50
Peptide secondary structure CCCCCHHHHCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 42.7747 4.65228 26.8267 199
cluster_2.pdb ( medoid) 38.241 3.71329 7.95256 142
cluster_3.pdb ( medoid) 27.0977 2.73086 7.60073 74
cluster_4.pdb ( medoid) 26.466 2.4182 6.72197 64
cluster_5.pdb ( medoid) 25.9668 3.96661 27.3316 103
cluster_6.pdb ( medoid) 17.0819 8.78121 30.8787 150
cluster_7.pdb ( medoid) 12.8652 5.51874 12.5615 71
cluster_8.pdb ( medoid) 10.0422 9.2609 30.013 93
cluster_9.pdb ( medoid) 7.65128 6.92694 13.982 53
cluster_10.pdb ( medoid) 5.39964 9.44508 26.5144 51
Laboratory of Theory of Biopolymers 2015