Project name: 1N7E unbound default 2 run A ATVRTYSC ss: CCCCCCCC

Status: done

submitted: 2015-02-25 18:46:48, status changed: 2015-03-13 10:56:11

Project settings
Protein sequence(s) GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASS input pdb
Peptide sequence ATVRTYSC
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.0409 3.7225 21.9821 190
cluster_2.pdb ( medoid) 28.0485 3.81482 22.9178 107
cluster_3.pdb ( medoid) 22.0384 3.1309 11.6792 69
cluster_4.pdb ( medoid) 20.436 5.08906 22.3705 104
cluster_5.pdb ( medoid) 18.9863 7.26841 25.9089 138
cluster_6.pdb ( medoid) 18.2657 4.98202 17.8149 91
cluster_7.pdb ( medoid) 10.3937 7.50453 28.7311 78
cluster_8.pdb ( medoid) 7.94927 12.5798 36.8612 100
cluster_9.pdb ( medoid) 4.10321 17.3035 39.0037 71
cluster_10.pdb ( medoid) 4.08713 12.7229 36.7539 52
Laboratory of Theory of Biopolymers 2015