Project name: 2p0w bound default 2 runA KGGKGLGKGGAKRHR ss: CCCCCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:43, status changed: 2015-03-13 10:56:17

Project settings
Peptide sequence KGGKGLGKGGAKRHR
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 27.7412 5.04665 16.2306 140
cluster_2.pdb ( medoid) 18.2166 2.90943 5.83026 53
cluster_3.pdb ( medoid) 14.7335 7.87322 19.1895 116
cluster_4.pdb ( medoid) 12.4675 13.2344 51.7707 165
cluster_5.pdb ( medoid) 11.9545 9.20154 30.1233 110
cluster_6.pdb ( medoid) 7.8167 15.0959 37.3728 118
cluster_7.pdb ( medoid) 7.7589 7.08863 22.7101 55
cluster_8.pdb ( medoid) 6.33587 15.7832 45.3978 100
cluster_9.pdb ( medoid) 4.60287 12.1663 37.0487 56
cluster_10.pdb ( medoid) 4.3646 19.9331 51.9684 87
Laboratory of Theory of Biopolymers 2015