Project name: 36a58e3f7a42a7

Status: done

submitted: 2018-10-09 20:26:39, status changed: 2018-10-10 11:02:22

Project settings
Protein sequence(s) LNVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSMGVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSPVTGGIYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD input pdb
Peptide sequence NLVPMVATV
Simulation mc cycles50
Peptide secondary structure psipred CCCCEEEEC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.6388 2.52278 5.58307 100
cluster_2.pdb ( medoid) 39.3754 3.7333 12.0727 147
cluster_3.pdb ( medoid) 38.7327 2.78834 26.5471 108
cluster_4.pdb ( medoid) 18.5168 5.94054 26.5279 110
cluster_5.pdb ( medoid) 15.9274 4.39495 11.8613 70
cluster_6.pdb ( medoid) 15.411 7.07286 18.2662 109
cluster_7.pdb ( medoid) 12.7604 6.11264 13.1696 78
cluster_8.pdb ( medoid) 11.1301 10.8714 24.7892 121
cluster_9.pdb ( medoid) 9.38697 9.05511 25.8277 85
cluster_10.pdb ( medoid) 7.82406 9.20238 21.9719 72

 
Laboratory of Theory of Biopolymers 2015