Project name: 2puy bound default B ARTKQTARKS ss: CCEEEECCCC

Status: done

submitted: 2015-02-19 18:28:31, status changed: 2015-03-13 10:56:36

Project settings
Protein sequence(s) HMIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEAI input pdb
Peptide sequence ARTKQTARKS
Simulation mc cycles50
Peptide secondary structure CCEEEECCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.4391 2.10574 10.9819 102
cluster_2.pdb ( medoid) 23.0654 6.37319 14.8134 147
cluster_3.pdb ( medoid) 16.6182 7.221 31.0502 120
cluster_4.pdb ( medoid) 16.4365 5.11059 17.7459 84
cluster_5.pdb ( medoid) 15.3743 6.30924 17.0831 97
cluster_6.pdb ( medoid) 14.5139 6.06315 25.9741 88
cluster_7.pdb ( medoid) 14.4277 8.1787 25.6489 118
cluster_8.pdb ( medoid) 10.0097 7.29289 15.2098 73
cluster_9.pdb ( medoid) 9.67402 8.99316 17.8394 87
cluster_10.pdb ( medoid) 7.14294 11.7599 28.4109 84
Laboratory of Theory of Biopolymers 2015