Project name: 2YQL unbound default 3 run A ARTKQTARKS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-25 18:47:41, status changed: 2015-03-13 10:56:44

Project settings
Peptide sequence ARTKQTARKS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_4 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 24.3701 7.50919 22.8725 183
cluster_2.pdb ( medoid) 21.8073 7.88725 26.458 172
cluster_3.pdb ( medoid) 20.5034 4.97478 17.7872 102
cluster_4.pdb ( medoid) 17.839 4.98906 13.9031 89
cluster_5.pdb ( medoid) 17.4772 6.5228 23.5939 114
cluster_6.pdb ( medoid) 15.1447 4.82018 15.9966 73
cluster_7.pdb ( medoid) 10.4901 10.7721 24.9296 113
cluster_8.pdb ( medoid) 8.35696 7.2993 18.2115 61
cluster_9.pdb ( medoid) 8.14622 7.61089 16.373 62
cluster_10.pdb ( medoid) 2.50933 12.3539 21.572 31
Laboratory of Theory of Biopolymers 2015