Project name: 2j6f bound default 2 runA PPKPRPRR ss: CCCCCCCC

Status: done

submitted: 2015-02-23 11:18:41, status changed: 2015-03-13 10:56:46

Project settings
Peptide sequence PPKPRPRR
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
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model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 57.5625 3.99566 13.7348 230
cluster_2.pdb ( medoid) 39.5056 2.98692 8.02429 118
cluster_3.pdb ( medoid) 23.7746 3.95379 9.9089 94
cluster_4.pdb ( medoid) 19.0413 4.88411 12.1517 93
cluster_5.pdb ( medoid) 17.3833 6.38545 15.5731 111
cluster_6.pdb ( medoid) 16.2919 6.13801 20.1623 100
cluster_7.pdb ( medoid) 14.7213 4.00779 9.47153 59
cluster_8.pdb ( medoid) 11.1595 5.73505 15.9949 64
cluster_9.pdb ( medoid) 10.946 5.39008 14.0328 59
cluster_10.pdb ( medoid) 6.25489 11.511 28.1377 72
Laboratory of Theory of Biopolymers 2015