Project name: PCT-P

Status: done

submitted: 2023-06-03 01:17:52, status changed: 2023-06-03 02:56:03

Project settings
Peptide sequence TSCNGHTCTRYN
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 26.8442 8.71697 25.177 234
cluster_2.pdb ( medoid) 14.8723 4.43777 22.6108 66
cluster_3.pdb ( medoid) 12.2773 7.90075 34.3851 97
cluster_4.pdb ( medoid) 10.568 11.2604 31.4909 119
cluster_5.pdb ( medoid) 9.42408 6.26056 20.2729 59
cluster_6.pdb ( medoid) 9.42131 11.5695 35.5834 109
cluster_7.pdb ( medoid) 9.03899 9.18244 25.0152 83
cluster_8.pdb ( medoid) 8.77737 10.0258 30.7914 88
cluster_9.pdb ( medoid) 6.17341 13.1208 29.466 81
cluster_10.pdb ( medoid) 6.10313 10.4864 31.7318 64