CABS-dock: PCT-P

Project name: PCT-P

Status: done

submitted: 2023-06-03 01:17:52, status changed: 2023-06-03 02:56:03

Project settings

Protein sequence(s)	APFRSALESSPADPATLSEDEARLLLAALVQDYVQMKASELEQEQEREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKRDMSSDLERDHRPHVSMPQNAN input pdb
Peptide sequence	TSCNGHTCTRYN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.8442	8.71697	25.177	234
cluster_2.pdb ( medoid)	14.8723	4.43777	22.6108	66
cluster_3.pdb ( medoid)	12.2773	7.90075	34.3851	97
cluster_4.pdb ( medoid)	10.568	11.2604	31.4909	119
cluster_5.pdb ( medoid)	9.42408	6.26056	20.2729	59
cluster_6.pdb ( medoid)	9.42131	11.5695	35.5834	109
cluster_7.pdb ( medoid)	9.03899	9.18244	25.0152	83
cluster_8.pdb ( medoid)	8.77737	10.0258	30.7914	88
cluster_9.pdb ( medoid)	6.17341	13.1208	29.466	81
cluster_10.pdb ( medoid)	6.10313	10.4864	31.7318	64