Project name: 2pv2 bound default 2 runAB NFTLKFWDIFRK ss: CCHHHHHHHHCC

Status: done

submitted: 2015-02-23 11:18:44, status changed: 2015-03-13 10:56:57

Project settings
Peptide sequence NFTLKFWDIFRK
Simulation mc cycles50
Peptide secondary structure CCHHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
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model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 78.0617 1.30666 4.92532 102
cluster_2.pdb ( medoid) 61.1631 2.43611 7.01932 149
cluster_3.pdb ( medoid) 56.3373 1.98802 26.0214 112
cluster_4.pdb ( medoid) 24.2526 4.08203 31.8559 99
cluster_5.pdb ( medoid) 15.3363 4.89037 28.6907 75
cluster_6.pdb ( medoid) 12.4151 4.02735 6.73697 50
cluster_7.pdb ( medoid) 11.6066 14.0438 40.8501 163
cluster_8.pdb ( medoid) 10.646 10.1446 32.3571 108
cluster_9.pdb ( medoid) 7.97334 5.51839 29.4433 44
cluster_10.pdb ( medoid) 6.15394 15.9248 42.5499 98
Laboratory of Theory of Biopolymers 2015